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Welcome to the PomBase Wiki
This wiki accompanies PomBase, a comprehensive resource for researchers working the fission yeast Schizosaccharomyces pombe. PomBase combines structural and functional annotation, literature curation and access to large-scale data sets.
Enjoy!
Meetings
- PomBase Planning Meetings - Agendas and Minutes
- PomBase Curator Meeting - Agendas and Action Items
- PomBase group call- Minutes/Actions
Useful Links
Documentation (in progress)
- PomBase User Documentation Drafts
- General PomBase Curator Documentation
- Curation Guidelines?
- Annotation in Artemis
- Qualifiers Used (will be mostly deprecated)
- describing residues modified or mutated (can we still do this???)
- Data Handling and creation Protocols
- External GO Data
- EMBL resubmission
- GO submission
- PhenotypeMapping for PMID:23697806
- Creating a ProteinComplexInventory
- Nomenclature
- Documentation for in-house ontologies
Work in progress
- Curation Tool
- Curation tool Features (completed in progress and pending)
- Curation tool brainstorming page
- GO terms we may not require in the curation tool (too specific)
- Annotation Extensions proposal
- Multi-gene phenotypes
- PomBase Website
- Canned queries for PomBase query tool
- BioGRID bait/hit notation mapping
- PomBase release testing
- track relabelling
- Curation
- Curation Consistency and QC
- Thoughts on regulation
- Sequence analysis
Inventories
- S.c. genes with no pombe orthologs
- Wild-type Pombe characteristics
- Example genes with various features
- Papers with no PMID
- Papers costing ££ to access
Projects
Reports
Mailing Lists
- pombelist - the fission yeast community mailing list (Mailman info page)
- SourceForge mailing lists - topics parallel trackers
Trackers
Deprecated pages
- Curator Training Papers
- PomBase Technical Meeting - Agendas and Action Items
- Questions to bring up at in-house meeting page was empty so moved here...
- PRO IDs for modified forms of S. pombe proteins - wasn't kept up to date; see Dropbox/pombase/ontologies/PR/pombe_mini_PR.obo instead
- Protein Feature Documentation - content now in pombase.org documentation
- Reference Genomes Information and Progress
- Lucene search issues (none pending)
The PomBase Team
For a complete list of local wiki pages, see TitleIndex.