Version 250 (modified by 4 years ago) (diff) | ,
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Welcome to the PomBase Wiki
This wiki accompanies PomBase, a comprehensive resource for researchers working the fission yeast Schizosaccharomyces pombe. PomBase combines structural and functional annotation, literature curation and access to large-scale data sets.
Enjoy!
Meetings
- PomBase Planning Meetings - Agendas and Minutes
- PomBase Curator Meeting - Agendas and Action Items
- PomBase group call- Minutes/Actions
Annotation priorities
- Chromosome Segregation
- Cytokinesis
- MitoticCellCycle
- Annotation Complete Checklist (in progress Val)
- AnnotationCompleteGenes
Useful Links
Documentation (in progress)
- PomBase User Documentation Drafts
- General PomBase Curator Documentation
- GO
- GO ontology structure
- GO Annotation guidelines (includes fission yeast specific guidelines, and pre- vs. post-composing GO terms)
- Phenotype Annotation Guidelines
- Gene Expression
- Complementation (needs updating)
- Modification
- Annotating (sequence) features in Artemis (needs updating)
- Protein feature annotation (needs updating-val)
- Genetic and physical Interactions (needs updating-val)
- Status and Species Distribution? (needs updating-val)
- General Annotation Extension Guidelines
- Describing Residues
- GO
- Data Handling and creation Protocols
- External GO Data
- EMBL resubmission
- GO submission
- PhenotypeMapping for PMID:23697806
- Ensembl browser track labelling
- HTP data file validation and upload instructions to send when we receive a form submission
- Files Used By EsyN
- Nomenclature
- Documentation for in-house ontologies
Work in progress
- Curation Tool
- PomBase Website
- Curation Consistency and QC
- Thoughts on regulation
- File formats
- Curation
- Sequence analysis
- Student project ideas
Inventories
- Distant orthologs
- Ortholog Table Updates
- Pombe Gene Losses
- S.c. genes with no pombe orthologs
- Wild-type Pombe characteristics
- Example genes with various features
Reports
Deprecated pages
- Known Drug Targets
- Creating a ProteinComplexInventory
- Curator Training Papers
- PomBase Technical Meeting - Agendas and Action Items
- Questions to bring up at in-house meeting page was empty so moved here...
- PRO IDs for modified forms of S. pombe proteins - wasn't kept up to date; see Dropbox/pombase/ontologies/PR/pombe_mini_PR.obo instead
- Protein Feature Documentation - content now in pombase.org documentation
- Reference Genomes Information and Progress
- Lucene search issues (none pending)
- Qualifiers Used (will be mostly deprecated)
- Curation tool brainstorming page
- describing residues modified or mutated (Artemis)
- Papers with no PMID
- Papers costing ££ to access
- Complementation Annotations to transfer
- Qualifiers used
- Physically Unmapped Genes and Proteins
The PomBase Team
For a complete list of local wiki pages, see TitleIndex.